Bioinformatics Scholarship

Student Interests:

Large throughput sequencing evaluation; bioinformatic analysis and system biology of germs; comparative genomics; diagnosis and annotation of non-coding RNAs; co-evolution of proteins and RNAs; algorithmic bioinformatics.

Thesis subject

Unusual diseases, particularly Mendelian and monogenic, have played a important role in elucidating the genetic basis of human diseases.

NGS

The evolution of modern techniques like next generation sequencing (NGS) together with the growth of computing power and bioinformatic software growth has empowered broader-scale analysis of rare diseases to understand their biological mechanics, genomic and proteomic basis, surroundings, and the mix of the diļ¬€erent contributing factors.

Therefore, particularly in the light of incomplete clinical penetrance, some uncommon diseases are viewed as complicated ailments. Massive quantities of biological information at different levels have been accumulated during the previous ten years, such as NGS (entire genome/exome sequencing, RNA-seq, DNA methylation), proteomics, and metabolomics, Cell Culture ( JoMa1).

These complex and massive data pose challenges for bioinformatic analyses, particularly in the interpretation and comprehension of biological mechanisms underlying ailments. We welcome submissions of reviews, research articles, brief communications, and theory papers.

Source

Journal of Online Mathematics and Biology Education
Mdpi.com/si/19452 Particular Issue
Prof. Dr. J. Peter W. Young Department of Biology, University of York, Heslington, York YO10 5DD, UK

Synopsis:


Genes are fundamental to our comprehension of biology, and modern improvements like genomics and genome editing have claimed genetics as a lively, varied and fast moving discipline. There’s a demand for great quality, open access journals in this region, and also the G e n e s group intends to present expert manuscript managing, serious peer evaluation, and quick publication across the entire field of genetics. Why not believe Gen mathematics for the next Epigenetic signal transduction theory?

Downloadable ESTEEM Modules

Sort by: Subdiscipline ModuleAuthor(s) OS
Botany3D FractaL-TreeJohn R. Jungck
Jennifer A Spangenberg
Noppadon Khiripet
Rawin Viruchpinta
Jutarat Maneewattanapluk
GeneticsABO Blood Group FrequenciesJohn R. Jungck
Jennifer A Spangenberg
win98, win2000, winXP
BiochemistryBalancing Chemical Equations Using Matrix AlgebraJohn R. Jungck
Jennifer A Spangenberg
win98, win2000, winXP, os9
BiometricsBioBayesJohn R. Jungck
Jennifer Galovich
Joe Reistetter
win98, win2000, winXP, os9, osx, linux
EcologyBiodiversityKokou Abalo
Sybille Clayton
Francie Cuffney
Phil Ryan
Paul Schuette
mac9, osx, win2000, win98

Bioinformatics
BioGrapherRama Viswanathan
Han Lai
Hlaing Lin
Khalid Qumsieh
John R. Jungck
New version coming soon (03/2014), osx, win2000, win98
Developmental Biology
Bioinformatics
Biological Cellular Automata Laboratory (BioCA Lab)John R. Jungck
Jennifer A Spangenberg
win98, win2000, winXP
Biometrics
Bioinformatics
Biostatistical ToolsTony Weisstein
Rama Viswanathan
Sheldon Gordon
Jennifer A Spangenberg
all, win2000, winXP
Genetics
Bioinformatics
Birthday Problem and Class Phenotypic ProbabilitiesJohn R. Jungck
Annelise L Myers
Jennifer A Spangenberg
all, win2000, winXP
Biochemistry
Bioinformatics
Buffer PreparationJohn R. Jungck
Annelise L Myers
Stephanie Gage
all, win2000, winXP
Ecology
Bioinformatics
Continuous Growth ModelsTony Weisstein
all, win2000, winXP
Biometrics
Bioinformatics
Database Construction and SamplingD. Timothy Gerber
David M. Reineke
, win2000, winXP
Evolution
Bioinformatics
DeFinetti 1.0Tony Weisstein
John R. Jungck
Tia Johnson
Ed Louis
all, win2000, winXP
Bioinformatics
Genetics
Deme 2.0Tony Weisstein
, win2000, winXP
Developmental Biology
Genetics
Developmental Allometry: Scaling in GrowthJohn R. Jungck
Jennifer A Spangenberg
win98, win2000, winXP, win2000, winXP
Evolution
Sequence Alignment
Dynamic ProgrammingTony Weisstein
, mac9, osx, win2000, win98, winxp
Evolution
Sequence Alignment
ESS: Evolutionary Stable Strategies Game Theory ModuleJohn R. Jungck
Jennifer A Spangenberg
win98, win2000, winXP, os9, osx, linux
Phylogenetics
Sequence Alignment
EvolSeqTony Weisstein
John R. Jungck
all, win2000, winXP, os9, osx, linux
Bioinformatics
Genetics
Evolution Through Natural SelectionTim Comar
, win2000, winXP, os9, osx, linux
Biometrics
Genetics
Fractal Fern GeneratorBerend Meijer
, win2000, winXP, os9, osx, linux
Genetics
Genetics
Genetic CodeTony Weisstein
all, win2000, winXP, os9, osx, linux
Phylogenetics
Genetics
GeoPhylTony Weisstein
all, win2000, winXP, os9, osx, linux
Bioinformatics
Evolution
Mathematics
Phylogenetics
Hidden Markov ModelTony Weisstein
mac9, osx, win2000, win98, winxp
Ecology
Evolution
Mathematics
Phylogenetics
Island BiogeographyJohn R. Jungck
Jennifer A Spangenberg
win98, win2000, winXP, osx, win2000, win98, winxp
Genetics
Evolution
Mathematics
Phylogenetics
javaBenzerJohn R. Jungck
Vince Streif
Peder Jungck
Stephen Everse
all, osx, win2000, win98, winxp
Ecology
Evolution
Mathematics
Phylogenetics
javaFOODWEBJohn R. Jungck
Vince Streif
win98, win2000, winXP, os9, osx, linux
Ecology
Evolution
Mathematics
Phylogenetics
Leslie/Lefkovitch Matrix Models for Age or Stage-structured PopulationsJohn R. Jungck
Jennifer A Spangenberg
win98, win2000, winXP, win2000, winXP, os9, osx, linux
Genetics
Evolution
Mathematics
Phylogenetics
Linkage AnalysisTony Weisstein
all, win2000, winXP, os9, osx, linux
Evolution
Evolution
Mathematics
Phylogenetics
Luria-DelbruckTony Weisstein
John R. Jungck
Doug Green
all, win2000, winXP, os9, osx, linux

Ecology
Tools
Mark-RecaptureJessie Panks
John R. Jungck
, win2000, winXP, os9, osx, linux
Biochemistry
Ecology
Tools
Michaelis-Menten Enzyme KineticsTony Weisstein
, win2000, winXP, os9, osx, linux
Genetics
Ecology
Tools
OperonTony Weisstein
all, win2000, winXP, os9, osx, linux
Biomathematics
Mathematics
Physiology
PharmacokineticsGretchen A. Koch
Slow processing in Excel 2008 for Mac, mac9, osx, win2000, win98, winxp
Phylogenetics
Mathematics
Physiology
Phylogeography SimulatorTony Weisstein
all, mac9, osx, win2000, win98, winxp
Biometrics
Mathematics
Physiology
PopToolsGreg Hood
win98, win2000, winXP
Bioinformatics
Mathematics
Physiology
Protein AnalysisJohn R. Jungck
Annelise L Myers
Srebrenka Robic
Gerry Shaw
all, win2000, winXP
Bioinformatics
Mathematics
Physiology
Serial DilutionsMarion Field Fass
Annelise L Myers
, win2000, winXP
Epidemiology
Mathematics
Physiology
SIR ModelTony Weisstein
all, win2000, winXP
Phylogenetics
Mathematics
Physiology
Split DecompTony Weisstein
John R. Jungck
all, win2000, winXP
Ecology
Mathematics
Physiology
Two-Species ModelTony Weisstein
Rene Salinas
John R. Jungck
mac9, osx, win2000, win98, winxp

Mathematics
Physiology
WDISPLAY: Wireless Room Area Network (RAN) Data Display UtilityRama Viswanathan
winXP, osx, win2000, win98, winxp